an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hydrogen selenide

vanillin

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

2-oxoglutaramate

1,4-dihydroxy-2-naphthoyl-CoA

2-amino-3-carboxymuconate-6-semialdehyde

reduced DCPIP

oxidized DCPIP

2,5-dioxopentanoate

(L-seryl)adenylate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

(S)-ureidoglycolate

glutathioselenol

selenodiglutathione

pseudouridine

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

octadecanal

4-oxoglutaramate

1-piperideine 6-carboxylate

L-dehydro-ascorbate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

1-pyrroline

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic-2,3-O-oxalyl-L-threonate

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

ectoine

H₂O

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

CO₂

4'-phosphopantetheine

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

5-dehydro-4-deoxy-D-glucarate

prephenate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-imidazolone-5-propanoate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

hydrogen peroxide

3-hydroxypropanoate

3-hydroxy-3-methylglutarate

3-keto-β-D-galactose

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

3-demethylubiquinol-6

(R)-2-methylimino-1-phenylpropan-1-ol

(-)-ephedrine

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

(S)-2-amino-6-oxohexanoate

glutathione disulfide

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

L-β-lysine

formate

oxalate

3-methyl-2-oxobutanoate

hydroxypyruvate

urea-1-carboxylate

urea

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

pseudouridine 5'-phosphate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

5-aminolevulinate

glycolate

S-methyl-5'-thioadenosine

orotidine 5'-phosphate

lipid IV_A

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

aminoacetone

glycerone phosphate

O-acetyl-L-serine

2-maleylacetate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

porphobilinogen

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(enterobacterial common antigen)-undecaprenyl diphosphate

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

dihydroxyacetone

pregn-5-ene-3,20-dione

pregn-5-ene-3,20-dione-17-ol

5-α-androstan-3β,17β-diol

5-androstene-3,17-dione

preuroporphyrinogen

ethanolamine

D-gluconate 6-phosphate

methylsalicylate

salicyl alcohol

shikimate 3-phosphate

shikimate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-phosphoglycolate

(R)-mandelate

(S)-mandelate

2-methylpropan-1-amine

4,5-dihydroxyphthalate

oxalosuccinate

6-methylsalicylate

H₂

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

carboxyphosphate

carbamoyl phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

(2R,3S)-3-methylmalate

citraconate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

quinolinate

β-nicotinate D-ribonucleotide

DNA without lesion

5-methylcytosine

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

tartronate semialdehyde

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

phosphoenolpyruvate

dimethylthiophosphate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-α-D-ribose

γ-L-glutamyl 5-phosphate

autoinducer 2

S-ribosyl-L-homocysteine

S-adenosyl 3-(methylsulfanyl)propylamine

carbonic acid

(R)-pantothenate

2-dehydropantoate

(S)-4-amino-5-oxopentanoate

3-mercaptopyruvate

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

oxaloacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-pyrimidinemethanol

4-hydroxy-2-nonenal

isochorismate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

lipid X

urocanate

(L-aspartyl)adenylate

(2,3-dihydroxybenzoyl)adenylate

N-(2,3-dihydroxybenzoyl)-L-serine trimer

N-(2,3-dihydroxybenzoyl)-L-serine

N-(2,3-dihydroxybenzoyl)-L-serine dimer

5-enolpyruvoyl-shikimate 3-phosphate

5-phospho-β-D-ribosylamine

acetyl phosphate

FK-506

31-O-desmethylFK-506

betaine aldehyde

(S)-dihydroorotate

propanoyl phosphate

thiamine phosphate

5-amino-6-(D-ribitylamino)uracil

N-acetyl-D-muramate 6-phosphate

citrate

N,N-dimethyl-1,4-phenylenediamine

anthranilate

xanthine

3-hydroxypropanal

1,3-propanediol

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

histidinol

L-histidinol phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

nicotinate adenine dinucleotide

3-deoxy-D-glycero-2,5-hexodiulosonate

2-dehydro-3-deoxy-D-gluconate

4-amino-4-deoxychorismate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

5-guanidino-2-oxopentanoate

3-deoxy-D-manno-octulosonate 8-phosphate

2-aminoacetaldehyde

2-aminomalonate semialdehyde

dethiobiotin

7,8-diaminopelargonate

N-(5-phosphoribosyl)-anthranilate

pyrazine-2-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

3-deoxy-α-D-manno-2-octulosonate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

histidinal

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

S-formylglutathione

8-amino-7-oxononanoate

pimeloyl-CoA

L-arabinonate

L-arabinono-1,4-lactone

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

α-D-ribose 1,5-bisphosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(lipoyl)adenylate

N-succinyl-L,L-2,6-diaminopimelate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

7-carboxy-7-deazaguanine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

phosphonoacetate

lipid A disaccharide (E. coli)

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-hydroxy-3-oxosuccinate

meso-tartrate

L-tartrate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

α-D-glucosamine 1-phosphate

coniferaldehyde

12α-hydroxy-3-oxocholan-24-oyl-CoA

deoxycholoyl-CoA

allopregnanolone

3-oxocholoyl-CoA

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(E)-3-(methoxycarbonyl)pent-2-enedioate

L-selenocystathionine

glutathionylspermidine

3-dehydroshikimate

coproporphyrinogen III

carbon monoxide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-iminoacetate

1,4-dihydroxy-2-naphthoate

N-carbamoylputrescine

2-dehydro-3-deoxy-L-galactonate

acetoacetate

thiamine diphosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

a methyl group

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-α-amino-ε-keto-pimelate

carbamate

L-citrulline

L-cysteine

L-methionine

L-glutamate

L-alanine

L-serine

L-proline

L-lysine

L-arginine

L-glutamine

L-valine

glycine

L-aspartate

L-threonine

L-leucine

L-isoleucine

L-tryptophan

L-tyrosine

L-histidine

L-phenylalanine

L-asparagine

L-cystine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homocysteine

L-ornithine

O-succinyl-L-homoserine

L-homoserine

O-phospho-L-homoserine

1-aminocyclopropane-1-carboxylate

L-canaline

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-allo-threonine

meso-diaminopimelate

2-hydroxy-5-oxoproline

D-nopaline

L-saccharopine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

iminoarginine

seleno-L-homocysteine

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

formyl-L-isoglutamine

N-formyl-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

N-acetyl-L-methionine

N⁶-methyl-L-lysine

N-carbamoyl-L-aspartate

S-methyl-L-methionine

3-phospho-L-serine

L-isoglutamine

L-2,4-diaminobutanoate

L,L-diaminopimelate

L-cystathionine

D-alanine

D-glutamate

D-arginine

D-aspartate

D-cysteine

(R)-β-lysine

β-alanine

(S)-3-amino-2-methylpropanoate

2,3-dihydroxybenzoate

salicylate

protocatechuate

trans-cinnamate

vanillate

4-aminobenzoate

5-deoxy-D-glucuronate

acetate

orotate

5-chloro-5-deoxy-D-ribonate

D-gluconate

allantoate

(R)-pantoate

D-mannonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-galacturonate

α-D-galacturonate

pristanate

myristate

arachidate

stearate

decanoate

palmitate

laurate

octanoate

7-hydroxylaurate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

13-sophorosyloxydocosanoate 6',6''-diacetate

sophorosyloxydocosanoate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

oleate

(15Z)-tetracosenoate

phytenate

di-homo-γ-linolenate

linoleate

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

(S)-lactate

(R)-lactate

(R)-glycerate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

2-oxoglutarate

pyruvate

glyoxylate

2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

4-(methylsulfanyl)-2-oxobutanoate

(R)-4-hydroxy-4-methyl-2-oxoglutarate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

(3S)-3-isopropenyl-6-oxoheptanoate

(3R)-3-isopropenyl-6-oxoheptanoate

3-oxoadipate

cis-homoaconitate

3-carboxy-cis,cis-muconate

(2R)-homocitrate

cis-aconitate

trans-aconitate

D-threo-isocitrate

chorismate

D-glucarate

α,ω-9Z-octadecenedioate

D-galactarate

(4S)-4-hydroxy-2-oxoglutarate

succinate

fumarate

(S)-malate

nicotinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

pyrazinamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

all-trans-retinyl palmitate

all-trans-retinol

3-oxo-24-ethyl-cholest-4-ene

3-oxo-24-ethyl-cholest-5-ene

(1S,2S,4R)-limonene-1,2-diol

(1R,2R,4S)-limonene-1,2-diol

(1R,4S)-1-hydroxymenth-8-en-2-one

(1S,4R)-1-hydroxymenth-8-en-2-one

(+)-(1S,4R)-limonene-1,2- epoxide

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

(4S)-7-hydroxy-4-isoprenyl-7-methyl-2-oxo-oxepanone

(4R)-7-hydroxy-4-isoprenyl-7-methyl-2-oxo-oxepanone

geranyl diphosphate

anguibactin

vibriobactin

enterobactin

iron(III) dicitrate

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

3-octaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

D-galactonate

D-altronate

3,6-anhydro-L-galactonate

5-dehydro-4-deoxy-D-glucuronate

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-β-L-threo-pentapyranos-4-ulose

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

arbutin-6-phosphate

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

D-ribulose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-arabinose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

β-L-rhamnopyranose

α-L-rhamnopyranose

α-L-fucopyranose

β-L-fucopyranose

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-ribopyranose

α-D-xylopyranose

β-D-mannopyranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-mannose

β-D-allopyranose

β-D-allofuranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

glycolaldehyde

L-glyceraldehyde

keto-D-fructose

L-fuculose

3,6-anhydro-L-galactofuranose

3,6-anhydro-α-L-galactopyranose

keto-L-rhamnulose

D-xylulose

D-ribulose

L-ribulose

L-xylulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine

glycerol

D-mannitol 1-phosphate

D-mannitol

D-ribitol

xylitol

4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate

sucrose

α-lactose

β-D-cellobiose

cellotetraose

stachyose

an unsaturated pectate trisaccharide

raffinose

XXXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

hydroquinone

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

scyllo-inositol

1D-chiro-inositol

myo-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

scyllo-inosose

1D-myo-inositol 3-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 4-monophosphate

propan-1-ol

phytol

ethanol

butan-1-ol

methanol

methylglyoxal

phytenal

(R)-lactaldehyde

(S)-lactaldehyde

1-propanal

formaldehyde

acetaldehyde

butan-1-al

(R)-acetoin

2,5-piperidinedione

menadione

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

caldariellaquinone

diacetyl

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

ferulate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-10

3-demethylubiquinol-8

3-demethylubiquinol-9

3-demethylubiquinol-7

demethylmenaquinol-8

demethylmenaquinol-11

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-7

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-9

menaquinol-8

menaquinol-11

menaquinol-13

menaquinol-12

menaquinol-7

menaquinol-6

menaquinol-10

menaquinol-9

ubiquinol-6

ubiquinol-10

ubiquinol-8

ubiquinol-9

ubiquinol-7

4-nitrophenol

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

methyl parathion

guanine

adenine

AMP

GMP

IMP

XMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dADP

dIDP

dGTP

dATP

dITP

dGMP

dAMP

hypoxanthine

adenosine

guanosine

inosine

2'-deoxyguanosine

2'-deoxyinosine

2'-deoxyadenosine

7,8-dihydrolumazine

6-carboxy-5,6,7,8-tetrahydropterin

5,6,7,8-tetrahydromonapterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

cyclic pyranopterin phosphate

molybdopterin

molybdopterin adenine dinucleotide

7,8-dihydromonapterin triphosphate

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

FADH₂

reduced riboflavin

FMNH₂

FAD

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

thymine

cytosine

preQ₁

isoguanine

CTP

dTMP

dTTP

dCMP

dCTP

dUMP

dUTP

UTP

UDP

dTDP

CDP

cytidine-3'-monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dUDP

dCDP

CMP

UMP

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

5-fluorouracil

precorrin-2

precorrin-1

coenzyme A

(R)-lipoate

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-GMP

8-oxo-GTP

ppGpp

pppGpp

cyclic-AMP

adenylo-succinate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

5'-deoxyadenosine

8-oxo-dGMP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-ATP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-fluorocytosine

glycine betaine

(S)-NADHX

(R)-NADHX

L-ascorbate

thiamine

nicotinate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

androsterone

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

campesterol

campest-4-en-3-one

testosterone

17-β-hydroxy-5-α-androstan-3-one

progesterone

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

cholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

5-α-pregnane-3,20-dione

campest-4-en-3β-ol

7α-hydroxy-5β-cholestan-3-one

7α,12α-dihydroxy-5β-cholestan-3-one

5α-androstane-3,17-dione

androst-4-ene-3,17-dione

5β-cholestane-3α,7α,12α-triol

17-α-hydroxyprogesterone

cholest-5-en-3-one

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

isocholate

deoxycholate

cholate

glycocholate

3-dehydrocholate

heptadecane

acryloyl-CoA

methylacrylyl-CoA

isobutanoyl-CoA

(3S)-3-isopropenyl-6-oxoheptanoyl-CoA

(3R)-3-isopropenyl-6-oxoheptanoyl-CoA

succinyl-CoA

acetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

dihomo γ-linolenoyl-CoA

3-hydroxypropanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

oxalyl-CoA

formyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

5-aminolevulinyl-CoA

3'-dephospho-CoA

choloyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

acetoacetyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

16-hydroxypalmitoyl-CoA

hexadecanedioyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

icosanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

butanoyl-CoA

propanoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

18-hydroxylinoleoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

trans-dienelactone

cis-dienelactone

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

taurine

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

methanethiol

thiocyanate

S-sulfanylglutathione

agmatine

spermine

spermidine

putrescine

4-aminobutanal

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

hydroxyl radical

superoxide

monodehydroascorbate radical

OH^-

selenite

molybdate

hydrogensulfite

sulfate

nitrate

hydrogencarbonate

sulfite

selenate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Mo²⁺

Zn²⁺

Ni²⁺

Mg²⁺

Cu²⁺

Fe²⁺

ammonium

H⁺

K⁺

Cu⁺

2-chloroacetate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydrogen cyanide

preQ₀

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(R)-citramalate

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

methyl red

3-phospho-D-glyceroyl-phosphate

2-O-(α-D-mannosyl)-D-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrin IX

protoporphyrinogen IX

Mg-protoporphyrin

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

hemin

protoheme

N₂

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal