an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

5-dehydro-D-gluconate

glutathione disulfide

glycerone phosphate

L-canavanine

canavaninosuccinate

L-arginino-succinate

O-ureido-L-homoserine

CO₂

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

hydrogen peroxide

urea

O-acetyl-L-serine

autoinducer 2

S-ribosyl-L-homocysteine

(R)-4'-phosphopantothenate

(R)-pantothenate

xanthine

formate

thiamine diphosphate

coproporphyrinogen III

glycolate

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

salicyl alcohol

methylsalicylate

(S)-dihydroorotate

selenophosphate

L-selenocystathionine

dihydroxyacetone

oxaloacetate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

(lipoyl)adenylate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

3-methyl-2-oxobutanoate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

N,N-dimethyl-1,4-phenylenediamine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

2-C-methyl-D-erythritol 4-phosphate

4-amino-4-deoxychorismate

phosphoenolpyruvate

tartronate semialdehyde

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

carbamoyl phosphate

(indol-3-yl)pyruvate

hexulose 6-phosphate

(S)-2-acetolactate

citrate

3-keto-L-gulonate 6-phosphate

3-dehydroshikimate

3-dehydroquinate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

DNA without lesion

α-D-glucosamine 1-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(α-hydroxyethyl)thiamine diphosphate

4'-phosphopantetheine

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate

orotidine 5'-phosphate

carboxyphosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

1,4-dihydroxy-2-naphthoate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

3-hydroxypropanal

prenyl diphosphate

acetyl phosphate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

(R)-4'-phosphopantothenoyl-L-cysteine

N-acetyl-D-muramate 6-phosphate

2-dehydropantoate

5-oxo-L-proline

3-ureidopropanoate

D-erythro-imidazole-glycerol-phosphate

L-histidinol phosphate

imidazole acetol-phosphate

histidinol

histidinal

γ-L-glutamyl 5-phosphate

carbonic acid

phosphonoacetate

(S)-2,3,4,5-tetrahydrodipicolinate

4-aminobutanoate

8-amino-7-oxononanoate

pimeloyl-CoA

(R)-5-phosphomevalonate

(R)-mevalonate

isopentenyl diphosphate

(R)-mevalonate diphosphate

propanoyl phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

S-methyl-5-thio-α-D-ribose 1-phosphate

dihydrolipoate

5-aminopentanoate

N-carbamoylputrescine

3-hydroxyanthranilate

anthranilate

2-maleylacetate

N-(5-phosphoribosyl)-anthranilate

butanoyl phosphate

3-phosphooxypyruvate

4-phosphooxy-L-threonine

N-carbamoyl-2-oxoglycine

(S)-ureidoglycolate

3-hydroxy-5- oxohexanoyl-CoA

3-hydroxy-5-oxohexanoate

oxamate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

N-Formyl-L-kynurenine

1,6-anhydro-N-acetyl-β-muramate

1,3-propanediol

prephenate

quinolinate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

aniline

agmatine

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

S-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

methanethiol

thiocyanate

superoxide

hydrogencarbonate

sulfite

thiosulfate

selenide

OH^-

hydrogensulfite

chloride

phosphate

diphosphate

Fe³⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

Na⁺

K⁺

(2E,6E)-farnesyl diphosphate

hydroxyl radical

FMN

FMNH₂

NADP⁺

NAD⁺

NADPH

NADH

demethylmenaquinol-8

(S)-NADHX

(R)-NADHX

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

2-chloroacetate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

ethene

(S)-ureidoglycine

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

4-dimethylaminophenylazobenzene

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

protoheme

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

hydrogen cyanide

L-homocysteine

DNA with lesion

ATP

AMP

ADP

2'-deoxyguanosine

2'-deoxyadenosine

hypoxanthine

2'-deoxyinosine

GDP

GMP

GTP

IMP

5'-deoxyadenosine

dGDP

dGTP

dADP

dATP

XMP

adenylo-succinate

ppGpp

pppGpp

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

dGMP

dAMP

isoguanine

8-oxo-GTP

dTMP

dUMP

dCMP

dTDP

dCDP

dTTP

dUTP

dCTP

UMP

CMP

UDP

CDP

CTP

UTP

5-hydroxy-CMP

5-hydroxy-CTP

cytidine-3'-monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

(S)-NADPHX

(R)-NADPHX

adenosine

inosine

guanosine

xanthosine

2'-deoxyuridine

thymidine

2'-deoxycytidine

uridine

cytidine

5,6-dihydrothymine

5,6-dihydrouracil

ADP-α-D-glucose

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

guanine

adenine

uracil

thymine

preQ₁

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

riboflavin

reduced riboflavin

orotate

(S)-1-pyrroline-5-carboxylate

hydantoin

(R)-acetoin

methylglyoxal

diacetyl

glycolaldehyde

(R)-lactaldehyde

(S)-lactaldehyde

acetaldehyde

butan-1-al

formaldehyde

1-propanal

aldehydo-D-ribose

β-D-ribopyranose

β-D-ribofuranose

α-D-ribofuranose

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-allofuranose

β-D-allopyranose

α-D-galactopyranose

β-D-galactopyranose

β-L-rhamnopyranose

α-L-rhamnopyranose

D-gluconate

D-mannonate

L-idonate

sucrose

maltotetraose

maltotriose

maltohexaose

maltoheptaose

maltopentaose

stachyose

raffinose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

L-rhamnulose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

L-ascorbate 6-phosphate

keto-L-tagatose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

arbutin-6-phosphate

salicin 6-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

methyl β-D-glucoside 6-phosphate

β-D-fructofuranose

glycerol

D-mannitol 1-phosphate

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

keto-L-rhamnulose

trans,octacis-decaprenyl phosphate

all-trans-retinol

all-trans-retinyl palmitate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

dioleoyl phosphatidate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

hydroquinone

2,3-dihydroxybenzoate

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

butan-1-ol

propan-1-ol

ethanol

methanol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

carbamate

L-α-amino-ε-keto-pimelate

L-kynurenine

L-cysteine

L-asparagine

L-threonine

L-glutamine

glycine

L-serine

L-tyrosine

L-aspartate

L-glutamate

L-arginine

L-lysine

L-histidine

L-methionine

L-tryptophan

L-alanine

L-leucine

L-phenylalanine

L-proline

L-isoleucine

L-valine

L-ornithine

L-cystathionine

L-aspartyl-4-phosphate

L,L-diaminopimelate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

seleno-L-homocysteine

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-methionine

S-methyl-L-cysteine

3-phospho-L-serine

D-alanine

D-glutamate

D-aspartate

D-serine

D-proline

β-alanine

(R)-3-amino-2-methylpropanoate

L-citrulline

L-canaline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

O-succinyl-L-homoserine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

meso-diaminopimelate

palmitate

butanoate

pentanoate

(S)-lactate

(R)-lactate

cis-aconitate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

(S)-malate

(4S)-4-hydroxy-2-oxoglutarate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

acetate

(R)-pantoate

allantoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

(S)-(+)-allantoin

acetyl-CoA

malonyl-CoA

3'-dephospho-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

CoA-disulfide

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

palmitoyl-CoA

propanoyl-CoA

pentanoyl-CoA

butanoyl-CoA

18-hydroxylinoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

crotonyl-CoA

trans-dienelactone

cis-dienelactone

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

thiamine

nicotinate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

(R)-lipoate

coenzyme A

preQ₀

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-serine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine