an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

histidinol

L-histidinol phosphate

CO₂

(S)-dihydroorotate

coproporphyrinogen III

citrate

3-dehydroshikimate

shikimate

oxaloacetate

oxalosuccinate

carboxyphosphate

carbamoyl phosphate

5-dehydro-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

phosphoenolpyruvate

quinolinate

β-nicotinate D-ribonucleotide

glycerone phosphate

β-D-ribosylnicotinate

hydrogen peroxide

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

CDP-glycerol

(R)-mandelate

(S)-mandelate

isopentenyl diphosphate

(R)-mevalonate diphosphate

porphobilinogen

2-maleylacetate

acetoacetate

4-fumaryl-acetoacetate

(2-hydroxyphenyl)acetate

homogentisate

4-maleyl-acetoacetate

shikimate 3-phosphate

(R)-pantothenate

phosphonoacetate

prenyl diphosphate

3-phosphooxypyruvate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

orotidine 5'-phosphate

DNA without lesion

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-amino-4-deoxychorismate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-prenylphlorisobutyrophenone

glycolate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

histidinal

urea

thiamine diphosphate

formamide

4'-phosphopantetheine

propane-1,3-diamine

xanthine

L-canavanine

2-dehydropantoate

3-methyl-2-oxobutanoate

(R)-4'-phosphopantothenoyl-L-cysteine

7-carboxy-7-deazaguanine

preuroporphyrinogen

(R)-4'-phosphopantothenate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

anthranilate

N-(5-phosphoribosyl)-anthranilate

nicotinate adenine dinucleotide

1,4-dihydroxy-2-naphthoate

3-deoxy-α-D-manno-2-octulosonate

urocanate

4-imidazolone-5-propanoate

pyrazine-2-carboxylate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(R)-5-phosphomevalonate

(R)-mevalonate

(S)-2-amino-6-oxohexanoate

selenophosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

O-acetyl-L-serine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

5-amino-6-(D-ribitylamino)uracil

lipid A disaccharide (E. coli)

lipid X

5-enolpyruvoyl-shikimate 3-phosphate

6-phospho D-glucono-1,5-lactone

carbonic acid

4-hydroxy-2-nonenal

thiamine phosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

D-gluconate 6-phosphate

α-D-glucosamine 1-phosphate

3-oxopropanoate

3-hydroxypropanoate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

L-selenocystathionine

N⁵-carboxyaminoimidazole ribonucleotide

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

4-methyl-2-oxopentanoate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

8-amino-7-oxononanoate

pimeloyl-CoA

(lipoyl)adenylate

lipid IV_A

3-deoxy-D-manno-octulosonate 8-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-3-methyl-2-oxopentanoate

4-oxoglutaramate

1-piperideine 6-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

aminoacetone

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-amino-3-carboxymuconate-6-semialdehyde

glutathione disulfide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

N-succinyl-L,L-2,6-diaminopimelate

autoinducer 2

S-ribosyl-L-homocysteine

L-arginino-succinate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-glutamine

glycine

L-glutamate

L-aspartate

L-proline

L-tryptophan

L-serine

L-phenylalanine

L-asparagine

L-tyrosine

L-isoleucine

L-alanine

L-histidine

L-threonine

L-valine

L-arginine

L-lysine

L-methionine

L-leucine

L-glutamate-5-semialdehyde

L-ornithine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homocysteine

L-canaline

3-sulfino-L-alanine

1-aminocyclopropane-1-carboxylate

L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

D-ornithine

meso-diaminopimelate

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

seleno-L-homocysteine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L,L-diaminopimelate

L-2,4-diaminobutanoate

L-cystathionine

L-isoglutamine

D-alanine

D-glutamate

D-lysine

D-proline

β-alanine

protocatechuate

4-aminobenzoate

acetate

D-gluconate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

aldehydo-D-galacturonate

palmitate

laurate

stearate

4-hydroxybutanoate

(R)-lactate

pyruvate

formate

2-oxoglutarate

2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

chorismate

fumarate

succinate

(S)-malate

nicotinamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

pyrazinamide

5-amino-4-imidazolecarboxyamide

phlorisovalerophenone

α-Kdo-(2→6)-lipid IV_A

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

all-trans-retinal

β-carotene

15,15'-dihydroxy-β-carotene

β-carotene 15,15' epoxide

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

4-prenylphlorisovalerophenone

deoxycohumulone

deoxyhumulone

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

D-altronate

L-idonate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-3-dehydro-6-deoxy-α-D-galactopyranose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

D-glyceraldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

ethanol

methanol

methylglyoxal

formaldehyde

acetaldehyde

menadione

caldariellaquinone

urate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

caldariellaquinol

demethylmenaquinol-8

phenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

guanine

adenine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dADP

dIDP

dATP

dGTP

dITP

dGMP

dAMP

hypoxanthine

xanthosine

guanosine

inosine

adenosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

tetrahydromethanopterin

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

preQ₁

isoguanine

UDP

dTTP

CTP

dUDP

CDP

dCDP

UTP

dUMP

dUTP

dCMP

dTMP

dCTP

dTDP

UMP

CMP

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

cob(I)alamin

adenosylcobalamin

precorrin-2

precorrin-1

coenzyme A

(R)-lipoate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

adenylo-succinate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

cyclic-AMP

cyclic-GMP

8-oxo-GTP

8-oxo-dGTP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

thiamine

nicotinate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

(+)-7-epi-jasmonate

cholest-4-en-3-one

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

cholest-5-en-3-one

cholesterol

acetyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

4-hydroxybutanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3'-dephospho-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

stearoyl-CoA

myristoyl-CoA

palmitoyl-CoA

lauroyl-CoA

octanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

propanoyl-CoA

butanoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(R)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

glutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

agmatine

putrescine

spermidine

dehydrospermidine

2-aminoprop-2-enoate

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

superoxide

hydroxyl radical

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

ω-saturated C55 dolichol phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

2-chloroacetate

2-iminosuccinate

2-iminobutanoate

oxygen

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

Fe³⁺

Mg²⁺

Fe²⁺

H⁺

ammonium

hydrogencarbonate

sulfite

selenide

hydrogensulfite

OH^-

chloride

phosphonate

phosphate

diphosphate

triphosphate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

preQ₀