an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

5-methylcytosine

DNA without lesion

carbamoyl phosphate

carboxyphosphate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

oxaloacetate

orotidine 5'-phosphate

γ-L-glutamyl 5-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

isopentenyl diphosphate

coproporphyrinogen III

CO₂

5-phospho-β-D-ribosylamine

acetyl phosphate

glycerone phosphate

N-(5-phosphoribosyl)-anthranilate

S-ribosyl-L-homocysteine

4'-phosphopantetheine

phosphoenolpyruvate

H₂O

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

anthranilate

N⁵-carboxyaminoimidazole ribonucleotide

L-arginino-succinate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1,6-anhydro-N-acetyl-β-muramate

6-phospho D-glucono-1,5-lactone

quinolinate

prephenate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

citrate

D-gluconate 6-phosphate

4-methylbenzyl alcohol

3-methylbenzyl alcohol

3-methylbenzaldehyde

1,3-propanediol

3-hydroxypropanal

CDP-glycerol

(S)-dihydroorotate

xanthine

4-fumaryl-acetoacetate

acetoacetate

3-deoxy-D-manno-octulosonate 8-phosphate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

hexulose 6-phosphate

β-D-ribosylnicotinate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(R)-4'-phosphopantothenoyl-L-cysteine

propanoyl phosphate

N-acetyl-D-muramate 6-phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

2-dehydropantoate

salicyl alcohol

(indol-3-yl)pyruvate

L-histidinol phosphate

histidinol

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

autoinducer 2

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-β-D-glucuronide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

hydrogen peroxide

chloroacetaldehyde

N-succinyl-L,L-2,6-diaminopimelate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

glutathione disulfide

β-D-fructose 2,6-bisphosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

α-D-glucosamine 1-phosphate

glycolate

DNA with lesion

L-homocysteine

ethylphosphate

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

3-chlorobenzyl alcohol

3-chlorobenzaldehyde

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

(2E,6E)-farnesyl diphosphate

pristanate

H⁺

ammonium

Cu²⁺

Fe²⁺

hydrogencarbonate

phosphate

diphosphate

chloride

glutathione

L-cysteate

3-sulfopyruvate

2-aminoprop-2-enoate

putrescine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

benzyl alcohol

4-methylbenzaldehyde

benzaldehyde

hydroquinone

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

luteolin

protocatechuate

2,3-dihydroxybenzoate

preQ₀

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

nicotinate

riboflavin

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

glycocholate

cholate

D-glucono-1,5-lactone

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

malonyl-CoA

3'-dephospho-CoA

CoA-disulfide

α-linolenoyl-CoA

linoleoyl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

pristanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

tributyrin

1,2-dibutyrin

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

fumarate

L-aspartate

succinate

(S)-malate

α,ω-9Z-octadecenedioate

3-carboxy-cis,cis-muconate

3-oxoadipate

pyruvate

acetate

formate

(S)-lactate

(R)-lactate

butanoate

octanoate

laurate

decanoate

7-hydroxylaurate

18-hydroxyoleate

18-hydroxystearate

16-hydroxypalmitate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

palmitate

phytenate

D-gluconate

D-mannonate

orotate

(R)-pantoate

D-tagaturonate

4-deoxy-L-threo-hex-4-enopyranuronate

β-D-glucuronate

aldehydo-D-galacturonate

carbamate

L-serine

β-alanine

L-alanine

L-glutamine

glycine

L-leucine

L-glutamate

D-glutamate

L-arginine

L-phenylalanine

L-tryptophan

L-tyrosine

D-alanine

D-aspartate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-formyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

L-asparagine

L-valine

L-isoleucine

L-methionine

L,L-diaminopimelate

L-ornithine

L-citrulline

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homoserine

L-aspartate 4-semialdehyde

meso-diaminopimelate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

glycerol

ethanol

methanol

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

unsaturated gellan tetrasaccharide

maltotriose

selaginose

raffinose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

stachyose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

α,α-trehalose

β-D-fructofuranose

β-L-fucopyranose

α-L-fucopyranose

α-D-ribofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

α-D-galactopyranose

β-D-galactopyranose

L-fuculose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

UDP-α-D-glucose

ADP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

methyl β-D-glucoside 6-phosphate

diacetyl

methylglyoxal

(S)-acetoin

(R)-acetoin

acetaldehyde

formaldehyde

(S)-lactaldehyde

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

UTP

cytosine

uridine 3'-monophosphate

cytidine-3'-monophosphate

dCMP

CTP

uracil

dUDP

dCDP

CDP

UDP

dTMP

dUMP

dTDP

dUTP

dTTP

dCTP

5-fluorouracil

CMP

UMP

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

thymine

guanine

adenine

hypoxanthine

preQ₁

xanthosine

guanosine

adenosine

inosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

ATP

GTP

ITP

ADP

GDP

GMP

XMP

IMP

AMP

dGTP

dATP

dGDP

dADP

dGMP

dAMP

reduced riboflavin

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

pppGpp

ppGpp

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenylo-succinate

5'-deoxyadenosine

5-fluorocytosine

cyclic di-3',5'-guanylate

5-hydroxy-CTP

5-hydroxy-CMP

β-nicotinamide D-ribonucleotide