an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

4-oxalocrotonate

(2E)-2-hydroxypenta-2,4-dienoate

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

picolinate

1-piperideine 6-carboxylate

4-oxoglutaramate

N⁵-carboxyaminoimidazole ribonucleotide

selenodiglutathione

glutathioselenol

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-dehydro-2-deoxy-D-gluconate 6-phosphate

1,4-dihydroxy-2-naphthoyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-dehydro-6-phospho-D-gluconate

2,2',3,3'-tetrahydroxybiphenyl

2,2',3-trihydroxybiphenyl

pyrogallol

N-acetyl-L,L-2,6-diaminopimelate

oxamate

2-oxoglutaramate

hydrogen selenide

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

glutathione disulfide

(2Z,4E)-2-aminomuconate

2-(α-hydroxyethyl)thiamine diphosphate

N-Formyl-L-kynurenine

N-acetyl-D-muramate 6-phosphate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

L-histidinol phosphate

5-enolpyruvoyl-shikimate 3-phosphate

butanoyl phosphate

thiamine triphosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

shikimate 3-phosphate

3-dehydroquinate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

L-arginino-succinate

canavaninosuccinate

L-canavanine

(S)-dihydroorotate

orotidine 5'-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

carbonic acid

autoinducer 2

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

shikimate

3-dehydroshikimate

N⁶-(D-psicosyl)-L-lysine

4-aminobutanoate

6-phospho D-glucono-1,5-lactone

3-deoxy-D-manno-octulosonate 8-phosphate

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

α-D-galactosyl-diphosphoundecaprenol

L-selenocystathionine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

preuroporphyrinogen

porphobilinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

3-phosphooxypyruvate

(S)-ureidoglycolate

N-carbamoyl-2-oxoglycine

N-(5-phosphoribosyl)-anthranilate

4'-phosphopantetheine

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

histidinol

nicotinate adenine dinucleotide

2-dehydropantoate

tartronate semialdehyde

(S)-2,3,4,5-tetrahydrodipicolinate

(2-hydroxyphenyl)acetate

4-fumaryl-acetoacetate

homogentisate

4-maleyl-acetoacetate

creatinine

4-acetamidobutanal

4-acetamidobutanoate

(2E)-hexadecenal

3,4-dihydroxyphenylacetaldehyde

D-glucurono-6,3-lactone

imidazole acetaldehyde

4-imidazoleacetate

dimethylsulfoniopropanoate

palmitaldehyde

prop-2-ynal

propynoate

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

(2Z,4E)-2-amino-6-oxohexa-2,4-dienoate

2-amino-3-carboxymuconate-6-semialdehyde

(S)-4-hydroxy-2-oxopentanoate

(4-hydroxyphenyl)acetate

anthranilate

3-hydroxyanthranilate

hexulose 6-phosphate

glycerone phosphate

L-β-lysine

oxalosuccinate

propanoyl phosphate

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

5-carboxymethyl-2-hydroxymuconate

(lipoyl)adenylate

2,6-dioxo-6-phenylhexa-3-enoate

(2Z,2E)-2-hydroxy-6-oxo-6-(2-hydroxyphenyl)-hexa-2,4-dienoate

(2Z,2E)-2-hydroxy-6-oxo-6-(2,3-dihydroxyphenyl)-hexa-2,4-dienoate

2-oxopent-4-enoate

(2R,3S)-2,3-dimethylmalate

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

prenyl diphosphate

γ-L-glutamyl 5-phosphate

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

4-amino-4-deoxychorismate

5-oxo-L-proline

N-succinyl-L,L-2,6-diaminopimelate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

ethanolamine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

CDP-glycerol

pregn-5-ene-3,20-dione-17-ol

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

pregn-5-ene-3,20-dione

5-androstene-3,17-dione

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

thiamine phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

S-ribosyl-L-homocysteine

formamide

DNA without lesion

carbamoyl phosphate

carboxyphosphate

4-imidazolone-5-propanoate

5-(methylsulfanyl)-α-D-ribose

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

coproporphyrinogen III

acetyl phosphate

O-acetyl-L-serine

(S)-2-amino-6-oxohexanoate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

urea

β-D-ribosylnicotinate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

3-oxopropanoate

5-dehydro-2-deoxy-D-gluconate

(E)-4-coumaroyl-CoA

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

glycolate

salicyl alcohol

methylsalicylate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

aminoacetone

selenophosphate

(S)-2,3-dihydrodipicolinate

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

oxalate

xanthine

squalene

hop-22(29)-ene

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

prephenate

hydrogen peroxide

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

urocanate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

α-D-glucosamine 1-phosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

D-gluconate 6-phosphate

oxaloacetate

citrate

2-isopropylmaleate

citraconate

(2R,3S)-3-methylmalate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

CO₂

β-nicotinate D-ribonucleotide

quinolinate

acetoacetate

H₂O

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

DNA with lesion

L-homocysteine

ethylphosphate

hydrogen cyanide

Mg-protoporphyrin

protoheme

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

siroheme

(Z,Z)-bilirubin-IX α

(Z,Z)-biliverdin-IX α

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

preQ₀

2-nitrobenzoate

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

Fe³⁺

Cr⁶⁺

Cr³⁺

Na⁺

ammonium

H⁺

Co²⁺

Mo²⁺

Zn²⁺

Mn²⁺

Cd²⁺

Mg²⁺

Fe²⁺

tungstate

sulfate

hydrogensulfite

selenite

OH^-

nitrate

nitrite

hydrogencarbonate

selenide

superoxide

selenate

thiosulfate

sulfite

phosphonate

phosphate

diphosphate

chloride

hydroxyl radical

nitric oxide

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

ferrichrome

anguibactin

glycine betaine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

cadaverine

spermidine

putrescine

3-acetylamino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

3-amino-4-hydroxybenzoate

3-amino-4-hydroxybenzaldehyde

S-(hydroxymethyl)glutathione

S-methyl-L-methionine

3-dimethylsulfoniopropionaldehyde

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

methanethiol

glutathione

thiocyanate

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

taurine

3-sulfocatechol

(R)-S-lactoylglutathione

all-trans-retinyl palmitate

D-glucono-1,5-lactone

methylacrylyl-CoA

3'-dephospho-CoA

3-hydroxypropanoyl-CoA

acryloyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

vinylacetyl-CoA

succinyl-CoA

isobutanoyl-CoA

malonyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

2-methylacetoacetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

acetyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

pentanoyl-CoA

propanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

ethene

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

pregnenolone

3-β-hydroxyandrost-5-en-17-one

cholesterol

cholest-5-en-3-one

17-α-hydroxypregnenolone

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

thiamine

nicotinate

riboflavin

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxal

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

FADH₂

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

menaquinol-6

menaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-7

3-demethylubiquinol-8

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

isoguanine

8-oxo-dGTP

8-oxo-GTP

dGMP

dIDP

dITP

IDP

ITP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

dGTP

dATP

pppGpp

ppGpp

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

XMP

5'-deoxyadenosine

adenylo-succinate

IMP

hypoxanthine

GMP

GTP

dADP

dGDP

GDP

AMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

ATP

ADP

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

xanthosine

inosine

adenosine

guanosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dCTP

dUTP

dTTP

CTP

UTP

dCMP

dTMP

dUMP

CMP

UMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cytidine-3'-monophosphate

uridine 3'-monophosphate

GDP-α-D-mannose

GDP-α-D-mannuronate

ADP-α-D-glucose

preQ₁

thymine

uracil

adenine

guanine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

(6R)-4a-hydroxy-tetrahydrobiopterin

orotate

dipicolinate

2',4,4',6'-tetrahydroxychalcone

baicalein

6,7-dehydrobaicalein

salicylaldehyde

4-hydroxybenzoate

2,2'-dihydroxybiphenyl

2-hydroxylaminobenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

urate

vanillyl mandelate

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

protocatechuate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

2,3-dihydroxybenzoate

catechol

4-methylcatechol

3-methylcatechol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

salicylate

trans-cinnamate

4-aminobenzoate

benzoate

diacetyl

methylglyoxal

glycolaldehyde

1-propanal

butan-1-al

1-octanal

formaldehyde

acetaldehyde

(S)-lactaldehyde

decanal

dodecanal

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-ribofuranose

α-D-xylopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

propan-1-ol

butan-1-ol

ethanol

methanol

phytol

glycerol

D-mannitol 1-phosphate

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

1D-myo-inositol 4-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 3-monophosphate

galactinol

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

an unsaturated pectate trisaccharide

raffinose

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate

sucrose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-xylulose

L-ribulose

D-ribulose

β-D-fructofuranose

L-fuculose

keto-L-rhamnulose

β-L-fucopyranose

α-L-fucopyranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

N⁶-(6-phospho-D-fructosyl)-L-lysine

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-gluconate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

sitosterol

3-oxo-24-ethyl-cholest-5-ene

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

betanidin

betanidin quinone

allantoate

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

(3E)-2-oxohex-3-enedioate

chorismate

L-aspartate

fumarate

succinate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

3-carboxy-cis,cis-muconate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

(2R,3S)-2-methylisocitrate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

butanoate

pentanoate

decanoate

7-hydroxylaurate

laurate

octanoate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

(2E)-hexadecenoate

phytenate

5-deoxy-D-glucuronate

(R)-pantoate

L-α-amino-ε-keto-pimelate

L-kynurenine

carbamate

L-serine

L-cysteine

L-threonine

L-tyrosine

L-glutamine

L-asparagine

glycine

L-arginine

L-histidine

L-lysine

L-glutamate

L-methionine

L-selenocysteine

L-alanine

L-phenylalanine

L-isoleucine

L-leucine

L-valine

L-proline

L-tryptophan

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-alanine

L-isoglutamine

L-cystathionine

L,L-diaminopimelate

L-ornithine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

L-2-acetamido-6-oxoheptanedioate

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

2-hydroxy-5-oxoproline

seleno-L-homocysteine

L-saccharopine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

S-methyl-L-cysteine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

O-acetyl-L-homoserine

L-citrulline

L-cystine

L-canaline

N⁶-(D-fructosyl)-L-lysine

O-succinyl-L-homoserine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-D-glutamate

L-alanyl-L-glutamate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine