an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(indol-3-yl)acetamide

H₂O

4-guanidinobutanoate

4-guanidinobutyramide

propionamide

acrylate

acrylamide

3-oxopropanoate

succinate semialdehyde

4-aminobutanoate

CO₂

oxaloacetate

formate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

N-(5-phosphoribosyl)-anthranilate

glycerone phosphate

phosphoenolpyruvate

citrate

γ-L-glutamyl 5-phosphate

(S)-dihydroorotate

carbamoyl phosphate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

acetyl phosphate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

S-ribosyl-L-homocysteine

isopentenyl diphosphate

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-enolpyruvoyl-shikimate 3-phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

xanthine

2,5-didehydro-D-gluconate

2-keto-D-gluconate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

(indol-3-yl)pyruvate

anthranilate

salicyl alcohol

methylsalicylate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

urea-1-carboxylate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

glycolate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

3-phosphooxypyruvate

β-D-fructose 2,6-bisphosphate

ethanolamine

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

5-dehydro-2-deoxy-D-gluconate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

α-D-glucosamine 1-phosphate

DNA without lesion

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

3-hydroxypropanal

1,3-propanediol

hydrogen peroxide

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

prenyl diphosphate

(R)-mevalonate diphosphate

L-canavanine

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

3-methylbenzaldehyde

3-methylbenzyl alcohol

4-methylbenzyl alcohol

carboxyphosphate

selenophosphate

3-methyl-2-oxobutanoate

orotidine 5'-phosphate

4-methyl-2-oxopentanoate

glutathione disulfide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

propanoyl phosphate

thiamine diphosphate

urocanate

4-imidazolone-5-propanoate

chloroacetaldehyde

2-dehydropantoate

β-D-ribosylnicotinate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

1,4-dihydroxy-2-naphthoate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

N-succinyl-L,L-2,6-diaminopimelate

(R)-4'-phosphopantothenate

(R)-pantothenate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

autoinducer 2

L-histidinol phosphate

histidinol

histidinal

(S)-3-methyl-2-oxopentanoate

quinolinate

(2S)-2-isopropyl-3-oxosuccinate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

urea

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

formamide

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(R)-mevalonate

(R)-5-phosphomevalonate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

prephenate

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ADP

ATP

AMP

GMP

IMP

dADP

dATP

GDP

GTP

dGDP

dGTP

adenylo-succinate

XMP

hypoxanthine

dGMP

2'-deoxyguanosine

dAMP

2'-deoxyadenosine

ppGpp

pppGpp

2'-deoxyinosine

ITP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

preQ₁

adenine

guanine

uracil

dUMP

dTMP

dCMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

UMP

CMP

UDP

CDP

CTP

UTP

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

inosine

adenosine

guanosine

xanthosine

2'-deoxyuridine

thymidine

2'-deoxycytidine

uridine

cytidine

ADP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

riboflavin

FMN

FAD

reduced riboflavin

FMNH₂

FADH₂

orotate

(S)-1-pyrroline-5-carboxylate

adenosylcobalamin

α-D-galactopyranose

β-D-galactopyranose

β-D-ribopyranose

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

methylglyoxal

benzaldehyde

4-methylbenzaldehyde

acetaldehyde

(R)-acetoin

diacetyl

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

arbutin-6-phosphate

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

keto-L-tagatose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-neuraminate

glycerol

maltohexaose

maltoheptaose

maltotetraose

maltopentaose

maltotriose

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

all-trans-retinol

all-trans-retinyl palmitate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

benzyl alcohol

myo-inositol

scyllo-inositol

1D-chiro-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

hydroquinone

2,3-dihydroxybenzoate

protocatechuate

ethanol

methanol

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-glutamate

L-aspartate

L-tryptophan

L-serine

L-arginine

glycine

L-valine

L-glutamine

L-phenylalanine

L-alanine

L-lysine

L-tyrosine

L-asparagine

L-histidine

L-leucine

L-proline

L-isoleucine

L-cysteine

L-methionine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

L-ornithine

L-canaline

L-homoserine

L-homocysteine

L-glutamate-5-semialdehyde

meso-diaminopimelate

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

N-acetyl-L-glutamate

3-phospho-L-serine

D-glutamate

D-alanine

D-aspartate

β-alanine

(S)-3-amino-2-methylpropanoate

2-oxoglutarate

pyruvate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

acetate

(R)-pantoate

5-deoxy-D-glucuronate

palmitate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

13-sophorosyloxydocosanoate 6',6''-diacetate

sophorosyloxydocosanoate

(R)-glycerate

(S)-lactate

(R)-lactate

propanoate

3-oxoadipate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

(S)-malate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

acetamide

malonyl-CoA

acetyl-CoA

succinyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

methylacrylyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

acetoacetyl-CoA

palmitoyl-CoA

propanoyl-CoA

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

cholate

glycocholate

nicotinate

thiamine

cob(I)alamin

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

coenzyme A

preQ₀

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-hydroxybenzoate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-demethylubiquinol-8

demethylmenaquinol-8

ubiquinol-8

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

3-chlorobenzaldehyde

3-chlorobenzyl alcohol

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

cadaverine

2-aminoprop-2-enoate

2-iminopropanoate

glutathione

hydrogencarbonate

selenide

chloride

phosphate

diphosphate

triphosphate

Fe²⁺

H⁺

ammonium

(R)-NADHX

(S)-NADHX

2-chloroacetate

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

protoporphyrin IX

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

phosphonoacetaldehyde

ethylphosphate

DNA with lesion