an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

5-methylcytosine

H₂O

phosphoenolpyruvate

formate

isopentenyl diphosphate

β-nicotinate D-ribonucleotide

glutathione disulfide

acetyl phosphate

3-oxopropanoate

succinate semialdehyde

4-aminobutanoate

carbamoyl phosphate

γ-L-glutamyl 5-phosphate

N-carbamoylputrescine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4'-phosphopantetheine

CO₂

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

propionamide

acrylate

acrylamide

S-ribosyl-L-homocysteine

N-(5-phosphoribosyl)-anthranilate

nicotinate adenine dinucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

L-canavanine

glycolate

chloroacetaldehyde

(lipoyl)adenylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

β-D-fructose 2,6-bisphosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

hexulose 6-phosphate

DNA without lesion

glycerone phosphate

α-D-glucosamine 1-phosphate

D-gluconate 6-phosphate

xanthine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2,5-didehydro-D-gluconate

2-keto-D-gluconate

CDP-glycerol

2-dehydropantoate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

6-phospho D-glucono-1,5-lactone

carboxyphosphate

β-D-ribosylnicotinate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

prenyl diphosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

(R)-mevalonate

oxaloacetate

(R)-4'-phosphopantothenate

(R)-pantothenate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

citrate

thiamine phosphate

N-succinyl-L,L-2,6-diaminopimelate

poly (glycerol phosphate)

(indol-3-yl)pyruvate

N-acetyl-D-muramate 6-phosphate

dihydroxyacetone

3-hydroxypropanal

1,3-propanediol

3-methylbenzaldehyde

3-methylbenzyl alcohol

4-methylbenzyl alcohol

autoinducer 2

anthranilate

acetoacetate

4-fumaryl-acetoacetate

3-phosphooxypyruvate

prephenate

ethanolamine

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

propanoyl phosphate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

hydrogen peroxide

1,6-anhydro-N-acetyl-β-muramate

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

urea

quinolinate

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

AMP

ATP

ADP

GDP

dGDP

dADP

dATP

GTP

dGTP

adenylo-succinate

GMP

IMP

2'-deoxyguanosine

2'-deoxyadenosine

hypoxanthine

2'-deoxyinosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

XMP

dAMP

dGMP

ITP

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

ppGpp

pppGpp

IDP

dITP

dIDP

preQ₁

guanine

adenine

thymine

uracil

cytosine

dUMP

dTMP

dCMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

UMP

CMP

CDP

UDP

CTP

UTP

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

cytidine-3'-monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

adenosine

inosine

guanosine

xanthosine

2'-deoxyuridine

thymidine

2'-deoxycytidine

cytidine

uridine

5-fluorouracil

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FMN

riboflavin

FMNH₂

reduced riboflavin

(S)-1-pyrroline-5-carboxylate

glycolaldehyde

β-D-galactopyranose

α-D-galactopyranose

β-D-ribopyranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

methylglyoxal

benzaldehyde

4-methylbenzaldehyde

acetaldehyde

formaldehyde

D-gluconate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

keto-D-fructose

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

D-xylulose

glycerol

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

benzyl alcohol

protocatechuate

2,3-dihydroxybenzoate

ethanol

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

hypoglycin B

carbamate

L-α-amino-ε-keto-pimelate

L-citrulline

L-methionine

L-aspartate

glycine

L-serine

L-alanine

L-valine

L-asparagine

L-glutamate

L-tryptophan

L-isoleucine

L-arginine

L-phenylalanine

L-lysine

L-proline

L-glutamine

L-leucine

L-tyrosine

L-aspartate 4-semialdehyde

L-ornithine

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

hypoglycin A

L-canaline

L-homocysteine

L-homoserine

meso-diaminopimelate

L-aspartyl-4-phosphate

L,L-diaminopimelate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

trans-4-hydroxy-L-proline

N-acetyl-L-glutamate

3-phospho-L-serine

D-glutamate

D-alanine

D-aspartate

β-alanine

pyruvate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

4-aminobenzoate

acetate

(R)-pantoate

(S)-lactate

(R)-lactate

propanoate

3-oxoadipate

3-carboxy-cis,cis-muconate

chorismate

fumarate

succinate

(S)-malate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

acetamide

3'-dephospho-CoA

acetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

succinyl-CoA

isobutanoyl-CoA

acetoacetyl-CoA

propanoyl-CoA

D-glucono-1,5-lactone

(indol-3-yl)acetate

cholate

glycocholate

nicotinate

thiamine

coenzyme A

(R)-lipoate

preQ₀

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-chlorobenzaldehyde

3-chlorobenzyl alcohol

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

agmatine

putrescine

glutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

hydrogencarbonate

chloride

phosphate

diphosphate

ammonium

H⁺

(R)-NADHX

(S)-NADHX

2-chloroacetate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

ethylphosphate

DNA with lesion