an oxidized electron donor
a reduced electron donor
a deaminated amino group acceptor
an aminated amino group acceptor
Charged-LEU-tRNAs
LEU-tRNAs
a 2-oxo acid
an amino acid
an acyl-CoA
a carboxylate
an oxidized ferredoxin [iron-sulfur] cluster
a reduced ferredoxin [iron-sulfur] cluster
NAD(P)H
NAD(P)+
an L-tyrosyl-[tRNAtyr]
a tRNAtyr
(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde
4α,14α-dimethyl-porifersta-8,25(27)-dienol
2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate
4-methylcyclohex-1,5-diene-1-carbonyl-CoA
isoshowacene
2-hydroxyhexadecanal
16-sinapoyloxypalmitate
3-methylquinolin-2-ol
(22R)-hydroxycholesterol
N-(2-methylpropyl)hydroxylamine
chloroeremomycin
3-hydroxy-3-methylbutanoate
2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tetracyclic spinosyn pseudoaglycone
rhamnosyl tricyclic spinosyn pseudoaglycone
spinosyn tricyclic macrolactone
11-dehydro-15-oxo spinosyn macrolactone
15-oxo spinosyn macrolactone
spinosyn macrolactone
diethylamine N-oxide
triethylamine N-oxide
UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate
nitroxyl
trans,octacis-decaprenylphospho-β-D-arabinofuranose
1,3-dihydro-2H-imidazol-2-one
2-phenylethyl β-D-glucopyranoside
formyl hopane
ribosyl hopane
adenosyl hopane
(2Z)-2-hydroxypenta-2,4-dienoate
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
(2Z)-2,4-dihydroxypent-2-enoate
(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA
(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA
(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA
(+)-3'-hydroxylarreatricin
(+)-larreatricin
2-trans,4-trans-xanthoxin
(2Z)-2-(acetamidomethylene)succinate
3-hydroxy-2-methylpyridine-5-carboxylate
3-hydroxy-2-methylpyridine-4,5-dicarboxylate
5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate
2-iminoacetate
L-histidinol phosphate
histidinol
histidinal
4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine
(R)-4'-phosphopantothenate
(R)-4'-phosphopantothenoyl-L-cysteine
core oligosaccharide-lipid A (E. coli K-12 core type)
5-amino-6-(5-phospho-D-ribitylamino)uracil
5-amino-6-(5-phospho-D-ribosylamino)uracil
succinate semialdehyde
oxalosuccinate
citrate
carbon monoxide
ammonia
D-glycero-β-D-manno-heptose 1,7-bisphosphate
D-glycero-β-D-manno-heptose 1-phosphate
lipid A disaccharide (E. coli)
hydroxylamine
carbamoyl phosphate
S-formylglutathione
2-succinylbenzoate
4-(2'-carboxyphenyl)-4-oxobutyryl-CoA
(S)-dihydroorotate
L-selenocystathionine
N-acetyl-D-muramate 6-phosphate
N-acetyl-D-galactosamine 6-phosphate
2-methyl-1,4-benzoquinone
D-galactosamine-6-phosphate
methyl-1,4-benzoquinol
5-enolpyruvoyl-shikimate 3-phosphate
shikimate
shikimate 3-phosphate
3-deoxy-D-arabino-heptulosonate 7-phosphate
3-dehydroquinate
N5-carboxyaminoimidazole ribonucleotide
glutathione disulfide
(S)-2-acetolactate
(S)-2-aceto-2-hydroxybutanoate
(R)-2,3-dihydroxy-3-methylpentanoate
ADP-D-glycero-β-D-manno-heptose
ADP-L-glycero-β-D-manno-heptose
orotidine 5'-phosphate
D-gluconate 6-phosphate
3-phosphooxypyruvate
hydrogen peroxide
phthalate
2,2'-disulfonyl azobenzene
3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate
2-phosphoglycolate
glycolate
acetyl phosphate
(L-threonylcarbamoyl)adenylate
(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate
1,4-dihydroxy-2-naphthoyl-CoA
(S)-3-methyl-2-oxopentanoate
pimeloyl-CoA
S-adenosyl-4-methylsulfanyl-2-oxobutanoate
8-amino-7-oxononanoate
(S)-2-amino-6-oxohexanoate
3-deoxy-D-manno-octulosonate 8-phosphate
D-erythro-imidazole-glycerol-phosphate
imidazole acetol-phosphate
lipid X
O-acetyl-L-serine
2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine
5-amino-1-(5-phospho-β-D-ribosyl)imidazole
4-amino-4-deoxychorismate
N-(5-phosphoribosyl)-anthranilate
anthranilate
3-deoxy-α-D-manno-2-octulosonate
3-methyl-2-oxobutanoate
4'-phosphopantetheine
lipid IVA
3-dehydroshikimate
N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide
S-ribosyl-L-homocysteine
autoinducer 2
H2
N-succinyl-L,L-2,6-diaminopimelate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA
2-(α-hydroxyethyl)thiamine diphosphate
carbonic acid
1-deoxy-L-glycero-tetrulose 4-phosphate
5-amino-6-(D-ribitylamino)uracil
thiamine phosphate
thiamine diphosphate
2-C-methyl-D-erythritol 4-phosphate
oxaloacetate
L-canavanine
urea
4-hydroxy-2-nonenal
prenyl diphosphate
7,8-diaminopelargonate
dethiobiotin
α-D-glucosamine 1-phosphate
4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate
selenophosphate
ethanolamine
(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate
2-C-methyl-D-erythritol-2,4-cyclodiphosphate
arsenite
isopentenyl diphosphate
isochorismate
2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate
2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
γ-L-glutamyl 5-phosphate
2-oleoylglycerol
5-phospho-β-D-ribosylamine
N1-(5-phospho-β-D-ribosyl)glycinamide
4-pyridoxolactone
N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate
1,6-anhydro-N-acetyl-β-muramate
(2S)-2-isopropylmalate
2-isopropylmaleate
(2R,3S)-3-isopropylmalate
(2S)-2-isopropyl-3-oxosuccinate
4-methyl-2-oxopentanoate
3-ethylmalate
2-oxovalerate
L-arginino-succinate
O-ureido-L-homoserine
canavaninosuccinate
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate
5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole
N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol
6-phospho D-glucono-1,5-lactone
glycerone phosphate
coproporphyrinogen III
xanthine
1,4-dihydroxy-2-naphthoate
CO2
phosphoenolpyruvate
H2O
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran
bisorganyltrisulfane
enol-phenylpyruvate
(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one
pyruvic oxime
1-piperideine 6-carboxylate
aminoacetone
4-methylphenol
L-homocysteine
2-iminopropanoate
2-iminobutanoate
L-alanyl-γ-D-glutamyl-meso-diaminopimelate
N-acetyl-L-glutaminyl-L-glutamine
N-acetyl-L-glutaminyl-L-glutamine amide
D-alanyl-D-alanine
γ-L-glutamyl-L-cysteine
L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
(glutathion-S-yl)-4-hydroxy-2-nonenal
protoheme
hydrogen cyanide
protoporphyrin IX
uroporphyrinogen-III
protoporphyrinogen IX
hydrogen sulfide
oxygen
sn-glycerol 3-phosphate
2,3-diphospho-D-glycerate
3-phospho-D-glyceroyl-phosphate
3-phospho-D-glycerate
2-phospho-D-glycerate
Reactive Blue 5
dTDP-4-dehydro-6-deoxy-α-D-glucopyranose
(2R)-2,3-dihydroxy-3-methylbutanoate
α-D-glucosamine 6-phosphate
N-acetyl-D-mannosamine 6-phosphate
S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine
1-oleoyl-2-lyso-glycerone phosphate
CMP-N-acetyl-β-neuraminate
5,10-methenyltetrahydrofolate mono-L-glutamate
superoxide
1-chloro-2,4-dinitrobenzene
2,4-dinitrophenyl-S-glutathione
N-acetyl-α-neuraminate
N-acetyl-β-neuraminate
dimethyl sulfide
S-(hydroxymethyl)glutathione
thiocyanate
glutathione
S-sulfanylglutathione
2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate
L-cysteate
3-sulfopyruvate
(R)-S-lactoylglutathione
H+
ammonium
Fe2+
trimethyl sulfonium
thiosulfate
sulfite
selenide
hydrogencarbonate
molybdate
hydrogensulfite
phosphate
diphosphate
chloride
2-aminoprop-2-enoate
(2Z)-2-aminobut-2-enoate
putrescine
choline
2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
sn-glycero-3-phosphocholine
glycerophosphoglycerol
glycerophosphoserine
sn-glycero-3-phosphoethanolamine
1-oleoyl-2-palmitoyl-phosphatidylglycerol
5'-deoxy-5'-fluoroadenosine
5-fluoro-5-deoxy-D-ribose 1-phosphate
5-chloro-5-deoxy-D-ribonate
5-chloro-4-hydroxy-2-oxopentanoate
5'-chloro-5'-deoxyadenosine
5-chloro-5-deoxyribose 1-phosphate
1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide
phosphoribulosylformimino-AICAR-phosphate
5-amino-4-imidazolecarboxyamide
5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide
5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide
(+)-7-epi-jasmonate
α-linolenoyl-CoA
linoleoyl-CoA
dihomo γ-linolenoyl-CoA
(+)-7-epi-jasmonoyl-CoA
3'-dephospho-CoA
(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA
(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA
malonyl-CoA
succinyl-CoA
acetyl-CoA
phytenoyl-CoA
oleoyl-CoA
(Z)-15-tetracosenoyl-CoA
decanoyl-CoA
octanoyl-CoA
stearoyl-CoA
palmitoyl-CoA
pristanoyl-CoA
hexadecanedioyl-CoA
FMN
FAD
(S)-NADHX
(R)-NADHX
NADH
NADPH
NAD+
NADP+
demethylmenaquinol-8
molybdopterin
coenzyme A
guanylyl molybdenum cofactor
MoO2-molybdopterin cofactor
7,8-dihydrofolate monoglutamate
tetrahydropteroyl tri-L-glutamate
5,6,7,8-tetrahydrofolate
(6S)-5-formyl-tetrahydrofolate mono-L-glutamate
5,10-methylenetetrahydropteroyl mono-L-glutamate
10-formyl-tetrahydrofolate mono-L-glutamate
5-methyltetrahydropteroyl mono-L-glutamate
5-methyltetrahydropteroyl tri-L-glutamate
thiamine
riboflavin
4-pyridoxate
pyridoxine
pyridoxamine
pyridoxamine 5'-phosphate
pyridoxal
(S)-1-pyrroline-5-carboxylate
6,7-dimethyl-8-(1-D-ribityl)lumazine
7,8-dihydroneopterin 3'-phosphate
cyclic pyranopterin phosphate
7,8-dihydroneopterin
7,8-dihydromonapterin
6-(hydroxymethyl)-7,8-dihydropterin
(7,8-dihydropterin-6-yl)methyl diphosphate
7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate
7,8-dihydroneopterin 3'-triphosphate
7,8-dihydroneopterin 2',3'-cyclic phosphate
molybdopterin adenine dinucleotide
7,8-dihydropteroate
guanine
adenine
2'-deoxyadenosine
2'-deoxyguanosine
2'-deoxyinosine
inosine
guanosine
xanthosine
adenosine
hypoxanthine
dAMP
dGMP
dITP
dATP
dGTP
dIDP
dADP
dGDP
IDP
GDP
ADP
GMP
IMP
XMP
AMP
ITP
GTP
ATP
dCMP
dTDP
dTTP
orotate
dCTP
dUTP
uracil
dCDP
dUDP
dTMP
dUMP
CDP
UDP
UTP
CTP
UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine
UDP-α-D-galactofuranose
UDP-N-acetyl-α-D-muramate
UDP-N-acetyl-α-D-glucosamine-enolpyruvate
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate
UDP-N-acetyl-α-D-muramoyl-L-alanine
UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine
UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine
UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine
UDP-α-D-glucose
UDP-α-D-galactose
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate
UDP-N-acetyl-α-D-glucosamine
dTDP-α-D-glucose
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
uridine
cytidine
2'-deoxycytidine
thymidine
2'-deoxyuridine
thymine
UMP
CMP
preQ1
preQ0
indole
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate
protocatechuate
4-aminobenzoate
chorismate
succinate
fumarate
L-aspartate
(S)-malate
cis-aconitate
D-threo-isocitrate
(R)-lactate
acetate
formate
pyruvate
decanoate
octanoate
(15Z)-tetracosenoate
oleate
(3E,5Z)-tetradecadienoate
di-homo-γ-linolenate
linoleate
α-linolenate
(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate
phytenate
stearate
pristanate
palmitate
3-phenyl-2-oxopropanoate
2-oxobutanoate
2-oxoglutarate
glyoxylate
L-serine
L-alanine
L-leucine
glycine
L-proline
L-glutamine
D-glutamate
L-glutamate
L-lysine
L-arginine
L-histidine
L-threonine
L-tyrosine
L-asparagine
L-cysteine
L-tryptophan
L-phenylalanine
D-alanine
seleno-L-homocysteine
L-2-amino-3-oxobutanoate
L-aspartyl-4-phosphate
3-phospho-L-serine
N-carbamoyl-L-aspartate
O-acetyl-L-homoserine
L-citrulline
L-isoleucine
L-valine
L-canaline
L-ornithine
L-homoserine
L-aspartate 4-semialdehyde
O-phospho-L-homoserine
O-succinyl-L-homoserine
L-glutamate-5-semialdehyde
S-adenosyl-L-methionine
S-adenosyl-L-homocysteine
S-(4-hydroxy-nonenal-3-yl)-L-cysteine
meso-diaminopimelate
L-methionine
L,L-diaminopimelate
L-cystathionine
methylglyoxal
diacetyl
glycolaldehyde
formaldehyde
acetaldehyde
D-glyceraldehyde
α-D-glucopyranose
β-D-glucopyranose
β-D-ribopyranose
α-D-galactopyranose
β-D-galactopyranose
aldehydo-D-ribose
β-D-ribofuranose
α-D-ribofuranose
ethanol
methanol
glycerol
(3R)-linalool
(3S)-linalool
myo-inositol
1D-myo-inositol 3-monophosphate
1D-myo-inositol 1-monophosphate
(3E,5Z)-tetradeca-3,5-dienoyl-CoA
1-(oleoyl)-sn-glycero-3-phosphoethanolamine
1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate
1-oleoyl-sn-glycerol 3-phosphate
dioleoyl phosphatidate
phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)
geranyl diphosphate
mono-trans,octa-cis-decaprenyl diphosphate
trans,octacis-decaprenyl phosphate
(2E,6E)-farnesyl diphosphate
di-trans,octa-cis-undecaprenyl phosphate
all-trans-octaprenyl diphosphate
di-trans,octa-cis-undecaprenyl diphosphate
galactosyl-glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)3-(heptosyl)3-Kdo2-lipid A-bisphosphate
galactosyl-(glucosyl)2-(heptosyl)3-Kdo2-lipid A-bisphosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)2-Kdo2-lipid A-phosphate
glucosyl-(heptosyl)2-Kdo2-lipid A
heptosyl-Kdo2-lipid A
(heptosyl)2-Kdo2-lipid A
α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A
α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA
α-Kdo-(2→6)-lipid IVA
4-O-phospho-α-Kdo-(2→6)-lipid IVA
maltotriose
maltotetraose
maltopentaose
maltoheptaose
maltohexaose
sucrose
N-acetyl-α-D-muramoyl-L-alanine(1-)
N-acetylmuramate
N-acetyl-α-D-glucosamine 1-phosphate
N-acetyl-β-D-glucosamine
β-D-fructofuranose
decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide
decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)
a peptidoglycan dimer (mycobacteria)
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
a peptidoglycan dimer (S. aureus)
a peptidoglycan dimer (E. faeciums)
a peptidoglycan with D,D cross-link (S. aureus)
a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)
a peptidoglycan with D,D cross-links (mycobacteria)
a peptidoglycan with L,D cross-links (mycobacteria)
a peptidoglycan dimer (meso-diaminopimelate containing)
a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)
ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine
sucrose 6F-phosphate
CMP-3-deoxy-β-D-manno-octulosonate
ADP-α-D-glucose
D-glyceraldehyde 3-phosphate
α-D-glucopyranose 1-phosphate
1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate
D-sedoheptulose 7-phosphate
D-erythrose 4-phosphate
5-phospho-α-D-ribose 1-diphosphate
β-D-fructose 1,6-bisphosphate
β-D-fructofuranose 6-phosphate
D-fructose 6-phosphate
α-D-glucose 6-phosphate
β-D-glucose 6-phosphate
D-xylulose 5-phosphate
1-deoxy-D-xylulose 5-phosphate
D-ribulose 5-phosphate
aldehydo-D-ribose 5-phosphate
α-D-ribose 5-phosphate
β-D-ribose 5-phosphate
aldehydo-D-arabinose 5-phosphate
α-D-ribose-1-phosphate
2-deoxy-α-D-ribose 1-phosphate
α-D-galactose 1-phosphate
β-D-glucopyranose 1-phosphate
β-D-fructofuranose 1-phosphate
1-(5-phospho-β-D-ribosyl)-ATP
1-(5-phospho-β-D-ribosyl)-AMP
cyclic-AMP
adenylo-succinate
pppGpp
ppGpp
5'-deoxyadenosine
reduced β-nicotinamide D-ribonucleotide
β-nicotinamide D-ribonucleotide
2-sulfanyl-N6-dimethylallyladenosine37 in tRNA
2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA