an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

carbon monoxide

γ-L-glutamyl 5-phosphate

5-carboxymethyl-2-hydroxymuconate

2-dehydropantoate

4'-phosphopantetheine

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

cis-coumarinic acid-β-D-glucoside

3-mercaptopyruvate

ADP-L-glycero-β-D-manno-heptose

itaconate

3-oxopropanoate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

urea-1-carboxylate

acetoacetate

methylamine

5-methoxytryptamine

5-methoxyindoleacetaldehyde

3,4-dihydroxyphenylacetaldehyde

tryptamine

tartronate semialdehyde

chloramphenicol

ethanolamine

4-amino-4-deoxychorismate

propanoyl phosphate

quinolinate

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

isopentenyl diphosphate

prenyl diphosphate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

lipid X

thiamine phosphate

thiamine diphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

carbonic acid

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

nigerose

xanthine

4-aminobutanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

4-fumaryl-acetoacetate

4-hydroxy-2-nonenal

L-histidinol phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

nicotinate adenine dinucleotide

preuroporphyrinogen

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

3-deoxy-α-D-manno-2-octulosonate

3-deoxy-D-manno-octulosonate 8-phosphate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

1,2-dichloroethane

2-chloroethanol

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

oxalosuccinate

anthranilate

N¹-(5-phospho-β-D-ribosyl)glycinamide

coproporphyrinogen III

5-aminolevulinate

porphobilinogen

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

3-demethylubiquinol-6

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

orotidine 5'-phosphate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

(S)-2,3,4,5-tetrahydrodipicolinate

3'-phosphoadenylyl-sulfate

(L-aspartyl)adenylate

(2,3-dihydroxybenzoyl)adenylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

aminoacetone

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

glutathione disulfide

(S)-dihydroorotate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

carbamoyl phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

acetyl phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

hydrogen peroxide

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

enol-phenylpyruvate

prephenate

glycerone phosphate

urea

5-phospho-β-D-ribosylamine

citrate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

4-imidazolone-5-propanoate

urocanate

oxaloacetate

homogentisate

4-maleyl-acetoacetate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

CO₂

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

phosphoenolpyruvate

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

L-dehydro-ascorbate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

ammonia

4-oxoglutaramate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

chloroacetaldehyde

selenodiglutathione

glutathioselenol

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

5-amino-6-(5-phospho-D-ribosylamino)uracil

(R)-synephrine

octopamine

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

3-oxopimeloyl-CoA

3-hydroxypimeloyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

crotonate

core oligosaccharide-lipid A (E. coli K-12 core type)

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-6-(5-phospho-D-ribitylamino)uracil

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

lipid A disaccharide (E. coli)

α-D-galacturonate 1-phosphate

autoinducer 2

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

pseudouridine

(4-hydroxyphenyl)acetate

1,4-dihydroxy-2-naphthoate

3'-ketosucrose

(S)-ureidoglycolate

hydrogen selenide

4-amino-2-methyl-5-pyrimidinemethanol

histidinol

histidinal

H₂

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

dialurate

(R)-1-amino-2-propanol O-2-phosphate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

L-canavanine

formamide

2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate

2-iminoacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-hydroxypropanoate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

DNA without lesion

2-oxoglutaramate

pseudaminate

L-selenocystathionine

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine

5-oxo-L-proline

N-(5-phosphoribosyl)-anthranilate

(2-hydroxyphenyl)acetate

shikimate

α-D-glucosamine 1-phosphate

lanthionine

2-phosphoglycolate

glycolate

shikimate 3-phosphate

pimeloyl-CoA

8-amino-7-oxononanoate

7,8-diaminopelargonate

dethiobiotin

3-ureidopropanoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

N-phenylhydroxylamine

2-C-methyl-D-erythritol 4-phosphate

(S)-mandelate

(R)-mandelate

succinate semialdehyde

2-(α-hydroxyethyl)thiamine diphosphate

α-D-galactosyl-diphosphoundecaprenol

pseudouridine 5'-phosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

O-acetyl-L-serine

(R)-pantothenate

hypotaurine

5-deoxy-α-ribose 1-phosphate

S-ribosyl-L-homocysteine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

L-β-lysine

3-dehydroquinate

3-dehydroshikimate

isochorismate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

α-ribazole

(S)-4-amino-5-oxopentanoate

D-glycero-β-D-manno-heptose 1-phosphate

ADP-D-glycero-β-D-manno-heptose

lipid IV_A

(2E,6E)-farnesyl diphosphate

pristanate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

2-iminopropanoate

2-iminosuccinate

4-(2-iminoethyl)phenol

4-[(2Z)-2-(methylimino)ethyl]phenol

2-iminobutanoate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

a mismatched DNA base pair

a properly matched DNA base pair

phenylacetate

ethylphosphate

adenosylcobalamin

cob(I)alamin

hemin

adenosyl-cobinamide phosphate

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cob(I)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

protoheme

hydrogen cyanide

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

siroheme

oxygen

hydrogen sulfide

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

1-oleoyl-2-lyso-glycerone phosphate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

superoxide

monodehydroascorbate radical

hydroxyl radical

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

nitrobenzene

S-(hydroxymethyl)glutathione

methionol

3-(methylsulfanyl)propanal

glutathione

thiocyanate

methanethiol

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

taurine

(R)-S-lactoylglutathione

3-sulfino-L-alanine

sulfate

sulfite

selenite

selenate

thiosulfate

nitrate

hydrogensulfite

hydrogencarbonate

chloride

phosphate

triphosphate

diphosphate

Na⁺

ammonium

H⁺

Ca²⁺

Co²⁺

Fe²⁺

L-homocysteine

4-methylphenol

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

2-aminoprop-2-enoate

4-[(Z)-2-aminoethenyl]phenol

4-[(E)-2-(methylamino)ethenyl]phenol

(2Z)-2-aminobut-2-enoate

agmatine

N-acetylputrescine

putrescine

spermidine

2-phenylethylamine

tyramine

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

serotonin

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2,5-dichlorophenol

allantoate

acetamide

isopenicillin N

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-dehydrocholate

isocholate

glycocholate

cholate

(+)-7-epi-jasmonate

(indol-3-yl)acetate

3'-dephospho-CoA

itaconyl-CoA

2-methylacetoacetyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

isovaleryl-CoA

3-methylcrotonyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

malonyl-CoA

succinyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

acetyl-CoA

2-methylbutanoyl-CoA

glutaryl-CoA

(S)-3-aminobutanoyl-CoA

phenylacetyl-CoA

(E)-glutaconyl-CoA

dihomo γ-linolenoyl-CoA

acryloyl-CoA

3-hydroxypropanoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

isobutanoyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

phytanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

2-hydroxyphytanoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctadecanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

menaquinol-6

menaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-7

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

riboflavin

nicotinate

thiamine

L-ascorbate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxal

pyridoxine

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydromonapterin triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

5,6,7,8-tetrahydromonapterin

guanine

adenine

2'-deoxyadenosine

2'-deoxyinosine

2'-deoxyguanosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

dAMP

dGMP

dIMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

ADP

GDP

GMP

IMP

XMP

AMP

ITP

GTP

ATP

XTP

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dTMP

dUMP

uridine 3'-monophosphate

cytidine-3'-monophosphate

UDP

dUDP

dTDP

dTTP

dCDP

CDP

orotate

CTP

UTP

dCTP

dUTP

uracil

5,6-dihydrothymine

5,6-dihydrouracil

dCMP

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-4-amino-4,6-dideoxy-N-acetyl-β-L-altrosamine

UDP-2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galacturonate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-mannosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

scopoletin

coumarin

4-methylumbelliferone

taxiphyllin

linustatin

neolinustatin

linamarin

lotaustralin

preQ₀

(indole-3-yl)acetonitrile

acrylonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-tyrosol

salicylaldehyde

urate

4-hydroxybenzoate

normetanephrine

metanephrine

3-methoxy-4-hydroxyphenylglycol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

2-aminophenol

(R)-noradrenaline

(R)-adrenaline

dopamine

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

2,3-dihydroxybenzoate

3,4-dihydroxyphenylacetate

enterobactin

coumarinate

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

L-nicotianamine

L-serine

β-alanine

(R)-β-lysine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

L-alanine

L-proline

L-leucine

L-glutamine

glycine

L-glutamate

D-glutamate

L-lysine

L-histidine

L-arginine

L-aspartate

L-asparagine

L-tyrosine

L-threonine

L-cysteine

L-tryptophan

L-phenylalanine

D-proline

D-alanine

D-cysteine

cis-4-hydroxy-D-proline

D-ornithine

seleno-L-homocysteine

L-selenomethionine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

3-phospho-L-serine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

L-citrulline

L-valine

L-isoleucine

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

L-ornithine

S-adenosyl-L-methionine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

L-4-hydroxyglutamate semialdehyde

L-canaline

L-glutamate-5-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-methionine

L,L-diaminopimelate

L-isoglutamine

L-cystathionine

chorismate

(3E)-2-oxohex-3-enedioate

fumarate

succinate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

cis-aconitate

D-threo-isocitrate

(R)-lactate

(S)-lactate

pyruvate

acetate

formate

propanoate

butanoate

octanoate

decanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

linoleate

di-homo-γ-linolenate

γ-linolenate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

palmitate

stearate

(R)-pantoate

D-gluconate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

glyoxylate

a coenzyme-A group

methylglyoxal

diacetyl

glycolaldehyde

1-propanal

isobutanal

formaldehyde

1-octanal

acetaldehyde

butan-1-al

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

propan-1-ol

ethanol

methanol

butan-1-ol

phytol

glycerol

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

phytate

D-myo-inositol (1,4,5)-trisphosphate

D-myo-inositol (1,3,4)-trisphosphate

D-myo-inositol (1,3,4,5)-tetrakisphosphate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

D-myo-inositol (1,4)-bisphosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-palmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-18:1-2-18:1-phosphatidylethanolamine

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

3-octaprenyl-4-hydroxybenzoate

octyl α-D-glucopyranoside

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

sucrose

α,α-trehalose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

2,4-diacetamido-2,4,6-trideoxy-β-L-altropyranose

3-dehydro-D-glucopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

CMP-pseudaminate

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-mannuronate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

6-deoxy-5-ketofructose 1-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-gulonate

aldehydo-L-galactonate

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

pppGpp

ppGpp

adenosine 3'-monophosphate

guanosine 3'-monophosphate

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-GMP

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-dGTP

8-oxo-dGMP

cyclic-AMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate